SNP Profiles of PA 121 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
1._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
2._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
3._GC-05-011-1-11	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
4._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
5._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
6._RUQ_1059	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
7._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
8._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	CC	AA	GG	CC	AG
9._PA_121_[PER]	CT	GG	GG	CT	TT	AC	TT	TT	CC	_	AA	GG	CC	AG
10._RUQ_1059	_	GG	GG	CT	_	_	_	TT	_	_	_	_	CC	AG
11._RUQ_1059	_	_	GG	_	_	_	_	TT	_	CC	_	GG	_	AG
12._RUQ_1059	_	_	CC	_	_	_	_	_	_	_	_	_	CC	_
13._GC-05-011-1-11	CT	AG	CG	CT	CT	AA	CT	TT	CC	CT	AT	AG	CC	AG
14._PA_121_[PER]	CT	AG	CG	CT	CT	AA	CT	TT	CC	CT	AT	AG	CC	AG
15._GC-05-011-1-11	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
16._PA_121_[PER]	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
17._RUQ_1059	AG	GG	CC	AG	AA	AC	AA	AA	_	_	AA	GG	GG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
1._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
2._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
3._GC-05-011-1-11	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
4._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
5._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
6._RUQ_1059	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
7._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
8._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
9._PA_121_[PER]	TT	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	GG	CT	AA
10._RUQ_1059	_	_	_	_	CC	GG	GG	_	TT	CC	CG	GG	CT	AA
11._RUQ_1059	_	_	_	_	_	GG	GG	AA	_	CC	CG	_	_	AA
12._RUQ_1059	TT	_	_	_	CC	CC	_	_	_	CC	CG	_	_	_
13._GC-05-011-1-11	TT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC
14._PA_121_[PER]	TT	AA	GG	CT	CC	GG	GG	AA	TT	CC	CC	GT	TT	CC
15._GC-05-011-1-11	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
16._PA_121_[PER]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
17._RUQ_1059	AA	AA	CG	AA	GG	CC	CC	_	AA	CC	CG	CC	_	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
1._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
2._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
3._GC-05-011-1-11	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
4._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
5._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
6._RUQ_1059	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
7._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
8._PA_121_[PER]	AG	GG	AA	CC	AA	CC	AA	GT	AC	AT	GG	X_X	X_X	X_X
9._PA_121_[PER]	AG	GG	AA	CC	AA	_	AA	GT	AC	AT	GG	X_X	X_X	X_X
10._RUQ_1059	AG	_	AA	CC	AA	CC	AA	GT	AC	_	_	X_X	X_X	X_X
11._RUQ_1059	_	_	_	_	AA	_	_	_	AC	_	_	X_X	X_X	X_X
12._RUQ_1059	_	_	AA	_	AA	GG	AA	_	AC	_	_	X_X	X_X	X_X
13._GC-05-011-1-11	AG	AG	AA	CC	AA	CC	AA	TT	CC	TT	CG	X_X	X_X	X_X
14._PA_121_[PER]	AG	AG	AA	CC	AA	CC	AA	TT	CC	TT	CG	X_X	X_X	X_X
15._GC-05-011-1-11	AA	AG	TT	CC	AA	CC	AA	GT	CC	AA	GG	X_X	X_X	X_X
16._PA_121_[PER]	AA	AG	TT	CC	AA	CC	AA	GT	CC	AA	GG	X_X	X_X	X_X
17._RUQ_1059	_	GG	AA	GG	AA	GG	AA	AC	AC	AT	GG	X_X	X_X	X_X

Input profile: PA_121_[PER]

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Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

1._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

2._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

3._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

4._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

5._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

6._PA_121_[PER] RUQ_1059

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_121_[PER]

identical
39 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

9._PA_121_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

10._PA_121_[PER] RUQ_1059

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._PA_121_[PER] RUQ_1059

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._PA_121_[PER] RUQ_1059

75 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

13._PA_121_[PER] GC-05-011-1-11

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._PA_121_[PER]

74.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

15._PA_121_[PER] GC-05-011-1-11

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

16._PA_121_[PER]

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

17._PA_121_[PER] RUQ_1059

50 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25